Submitted by lev_lafayette on Thu, 09/17/2009 - 05:29
Different Wikis are suitable for different things. TWiki has the best features, but really needs some crafting in terms of appearance. MediaWiki is easily to deploy, is attractive, but is not structured. If you need a structured Wiki with workspaces you'll might want Confluence. If you want community development in an unstructured manner, you want MediaWiki. If you want separate webs, structure, but also community development, go for TWiki - and then reskin it.
Submitted by lev_lafayette on Mon, 08/31/2009 - 04:38
EMBOSS is "The European Molecular Biology Open Software Suite", a free and open source analysis package specially developed for the molecular biology community, by allowing the retrieval of sequence data in a variety of formats as well as providing extensive libraries.
Submitted by lev_lafayette on Fri, 07/31/2009 - 03:49
UltraScan "attempts to be a comprehensive data analysis tool for the hydrodynamic studies of macromolecules and macromolecular assemblies with analytical ultracentrifugation experiments."
Sounds like fun. Let's install it. Get the tarball, ignore the part of the site which uses frames and extract in a sensible place, such as /usr/local/src/ULTRASCAN (
tar xvf ultrascan-9.9-888-qt-3.3.8-ix86-linux.tar.gz).
Submitted by lev_lafayette on Wed, 07/15/2009 - 10:15
Google have announced Google Chrome OS. This is interesting on several fronts.
Firstly, and most obviously, this is an open statement of war on Microsoft. It is written in the text of the announcement "We hear a lot from our users and their message is clear — computers need to get better." This device will have no MS APIs on it. None. Nada. The end of the MS lock in.
Submitted by lev_lafayette on Mon, 06/22/2009 - 02:02
Which bank gets confused about some fairly trivial technical and security issues on their own helpdesk system?
Submitted by lev_lafayette on Mon, 06/01/2009 - 07:21
OpenFOAM (Open Field Operationa and Manipulation) is a computational fluid dynamics toolbox which simulates "anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options." All this and free and open source as well.
Submitted by lev_lafayette on Tue, 05/26/2009 - 06:24
Multipurpose Internet Mail Extensions (MIME) is an Internet standard that extends the format of e-mail to support various extended formats. However with older versions of Mailman there is a serious bug which affects the archives.
MIME allows the following:
- Text in character sets other than ASCII
- Non-text attachments
- Message bodies with multiple parts
- Header information in non-ASCII character sets
Submitted by lev_lafayette on Thu, 05/21/2009 - 04:42
From their website; "Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom."
Submitted by lev_lafayette on Thu, 05/14/2009 - 06:34
Developed by D.E. Shaw Research, Desmond performs high-speed molecular dynamics simulations of biological systems using parallel algorithms and numerical techniques. The
README.txt explains the horror that will prevail...
Submitted by lev_lafayette on Wed, 05/13/2009 - 02:12
NAMD is a parallel molecular dynamics code for large biomolecular systems. Version 2.7b1 has some advantages over 2.6 and an extensive user's guide. CUDA (Compute Unified Device Architecture) is a parallel computing architecture developed by NVIDIA providing a computing engine in NVIDIA graphics processing units or GPUs. It should make NAMD awesome, if it works.