Blogs
Installing Dreamwidth on a Ubuntu Server
Submitted by lev_lafayette on Fri, 09/18/2009 - 01:17.Dreamwidth is an alternative to Livejournal that uses much of the same code-base. However they is certain additional features that make this a more worthwhile product to develop even if it currently is in a beta-stage.
Comparison between TWiki, MediaWiki and Confluence
Submitted by lev_lafayette on Thu, 09/17/2009 - 05:29.Executive Summary
Different Wikis are suitable for different things. TWiki has the best features, but really needs some crafting in terms of appearance. MediaWiki is easily to deploy, is attractive, but is not structured. If you need a structured Wiki with workspaces you'll might want Confluence. If you want community development in an unstructured manner, you want MediaWiki. If you want separate webs, structure, but also community development, go for TWiki - and then reskin it.
Introduction
Installing EMBOSS on a 64-bit AMD Opteron Cluster running CentOS 5 Linux
Submitted by lev_lafayette on Mon, 08/31/2009 - 04:38.EMBOSS is "The European Molecular Biology Open Software Suite", a free and open source analysis package specially developed for the molecular biology community, by allowing the retrieval of sequence data in a variety of formats as well as providing extensive libraries.
Installing Ultrascan on a 64-bit AMD Opteron Cluster running CentOS 5 Linux
Submitted by lev_lafayette on Fri, 07/31/2009 - 03:49.UltraScan "attempts to be a comprehensive data analysis tool for the hydrodynamic studies of macromolecules and macromolecular assemblies with analytical ultracentrifugation experiments."
Sounds like fun. Let's install it. Get the tarball, ignore the part of the site which uses frames and extract in a sensible place, such as /usr/local/src/ULTRASCAN (tar xvf ultrascan-9.9-888-qt-3.3.8-ix86-linux.tar.gz).
Now the fun starts
Submitted by lev_lafayette on Wed, 07/15/2009 - 10:15.Google have announced Google Chrome OS. This is interesting on several fronts.
Firstly, and most obviously, this is an open statement of war on Microsoft. It is written in the text of the announcement "We hear a lot from our users and their message is clear — computers need to get better." This device will have no MS APIs on it. None. Nada. The end of the MS lock in.
Which Bank?
Submitted by lev_lafayette on Mon, 06/22/2009 - 02:02.Which bank gets confused about some fairly trivial technical and security issues on their own helpdesk system?
Installing OpenFOAM 1.5 on a 64-bit AMD Opteron Cluster running CentOS 5 Linux
Submitted by lev_lafayette on Mon, 06/01/2009 - 07:21.OpenFOAM (Open Field Operationa and Manipulation) is a computational fluid dynamics toolbox which simulates "anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options." All this and free and open source as well.
Annoying older Mailman bug with certain MIME types.
Submitted by lev_lafayette on Tue, 05/26/2009 - 06:24.Multipurpose Internet Mail Extensions (MIME) is an Internet standard that extends the format of e-mail to support various extended formats. However with older versions of Mailman there is a serious bug which affects the archives.
MIME allows the following:
- Text in character sets other than ASCII
- Non-text attachments
- Message bodies with multiple parts
- Header information in non-ASCII character sets
- etc.,
Installing Velvet 0.7.31 on a 64-bit AMD Opteron Cluster running CentOS 5 Linux
Submitted by lev_lafayette on Thu, 05/21/2009 - 04:42.From their website; "Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom."
Installing Desmond-2.0.4-0 on a 64-bit AMD Opteron Cluster running CentOS 5 Linux
Submitted by lev_lafayette on Thu, 05/14/2009 - 06:34.Developed by D.E. Shaw Research, Desmond performs high-speed molecular dynamics simulations of biological systems using parallel algorithms and numerical techniques. The README.txt explains the horror that will prevail...
